Overview
BioShell supports nationally delivered training events and research projects across Australia. This page highlights workshops delivered using BioShell and how you can get involved.
Training workshops
The following workshops have been delivered using BioShell as the computational environment. All training materials are openly available via Zenodo.
Note: All BioShell training events are coordinated by the Australian BioCommons Training Team. Visit biocommons.org.au/event-support to find out how to run a BioShell-powered workshop at your institution.
2026
Willet C, Geaghan M, Gagalova K, Antczak M, Samaha G, O’Brien M. (2026). WORKSHOP: Unlocking nf-core: customising workflows for your research. Zenodo. https://doi.org/10.5281/zenodo.20453332
Williams S. (2026). WORKSHOP: Spatial omics sampler. Zenodo. https://doi.org/10.5281/zenodo.18795925
2025
Jaya F, Williams S, O’Brien MJ, Matigian N, Thind AS, Wang C, Mori G. (2025). WORKSHOP: Spatial omics. Zenodo. https://doi.org/10.5281/zenodo.18168944
Jaya F, Geaghan M, Xue W, Antczak M, Gauthier M-E, Beecroft S, O’Brien M, et al. (2025). WORKSHOP: Nextflow for the life sciences. Zenodo. https://doi.org/10.5281/zenodo.16791039
2024
Stuart K, Samaha G, Barugahare A, Miller S, Deshpande N, Lu C-Y. (2024). WORKSHOP: Genetic Outlier Analysis. Zenodo. https://doi.org/10.5281/zenodo.14676276
2023
Samaha G, Deshpande N, Lu C-Y, Chung J, Stott A, Ip A. (2023). WORKSHOP: RNASeq: reads to differential genes and pathways. Zenodo. https://doi.org/10.5281/zenodo.10045628
Samaha G, Willet C, Hakkaart C, Beecroft S, Stott A, Ip A, Cooke S. (2023). WORKSHOP: Unlocking nf-core: customising workflows for your research. Zenodo. https://doi.org/10.5281/zenodo.8026170
Research outcomes
[AUTHOR TO SUPPLY — add publications or datasets that used BioShell. Include DOI where available.]
Get involved
- Run a workshop: Contact the BioCommons Training Team to deliver a BioShell-powered training event at your institution.
- Share your work: If you have published research or training materials using BioShell, let us know so we can feature it here.
- Contribute: Visit the BioShell GitHub repository to report issues or contribute to development.