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Using BioShell

Once you are connected to your BioShell environment, you have access to a curated library of bioinformatics tools, interactive coding environments, and an AI-assisted support agent.

Use the sections below to find what you need.

I want to… Go to
Choose the right VM size for my analysis Choosing a flavour
Find, install, and load a bioinformatics tool Tools and reference data
Work in a Jupyter or RStudio notebook Interactive environments
Run a Nextflow workflow using CVMFS containers Using Nextflow with CVMFS