Running AlphaFold on NCI Gadi HPC

NCI Gadi

The ColabFold version of AlphaFold is available on NCI’s Gadi. Gadi is more than 10x larger than Artemis, so offers potentially far more significant resources.

Gadi uses a general architecture similar to Artemis so any workflows you have developed can be readily adapted to run on Gadi.

Usage and example PBS jobscripts for AlphaFold are well-documented here: NCI Help - Colabfold

You may also shift your Singularity images and workflows to Gadi.

For access to NCI, see https://nci.org.au/users/how-access-nci or contact sih.info@sydney.edu.au

Once you have an account you will need to join the “Colab Fold Project - if89: Australia BioCommons Tools and Workflows”. To request access to this project visit: https://my.nci.org.au/mancini/project/if89